Dmitry Ivanov
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Miramova A, Gartner A and Ivanov D. (2024) How to sensitize glioblastomas to temozolomide chemotherapy: a gap-centered view. Front. Cell Dev. Biol. 12:1436563. doi: 10.3389/fcell.2024.1436563
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Hwang, T., Sitko, L.K., Khoirunnisa, R., Navarro Aguad, F., Samuel, D.M., Park, H., Cheon, B., Mutsnaini, L., Lee, J., Takeda, S., Lee, S.*, Ivanov D.*, and Gartner, A*. (2024) Comprehensive whole genome sequencing reveals origins of mutational signatures associated with aging and temozolomide chemotherapy. Nucleic Acids Res. In revision. bioRxiv 2024.04.17.590003; DOI: 10.1101/2024.04.17.590003 *Co-corresponding authors
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Son, K., Takhaveev, V., Mor, V., Yu, H., Dillier, E., Zilio, N., Püllen, N.J.L., Ivanov, D., Ulrich, H. D., Sturla, S.J., and Scharer, O.D. (2024) Trabectedin derails transcription-coupled nucleotide excision repair to induce DNA breaks in highly transcribed genes. Nature Communications 15, 1388 DOI: 10.1038/s41467-024-45664-7
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Ivanov D, Hwang T, Sitko LK, Lee S, Gartner A. (2023) Experimental systems for the analysis of mutational signatures: no 'one-size-fits-all' solution. Biochem Soc Trans 51 (3): 1307-1317. Link to paper
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Chavda A.P., Ang, K., and Ivanov, D. (2017) The torments of the cohesin ring. Nucleus 8, 261-267. Link to paper
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Huber, R.G., Kulemzina, I., Ang, K., Chavda, A.P., Suranthran, S., Teh, J.-T., Kenanov, D., Liu, G., Rancati, G., Szmyd, R., Kaldis, P., Bond, P.J., and Ivanov, D. (2016) Impairing Cohesin Smc1/3 Head Engagement Compensates for the Lack of Eco1 Function. Structure 24, 1991-1999. Link to paper
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Kulemzina, I., Ang, K., Zhao, X., Teh, J.-T., Verma, V., Suranthran, S., Chavda, A.P., Huber, R.G., Eisenhaber, B., Eisenhaber, F., Yan, J., and Ivanov, D. (2016) A reversible association between Smc coiled coils is regulated by lysine acetylation and is required for cohesin loading on the DNA. Mol. Cell 63, 1044-1054. Link to paper
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Kulemzina, I., Schumacher, M.R., Verma, V., Reiter, J., Metzler, J., Failla, A.V., Lanz, C., Sreedharan, V.T., Rätsch, G., and Ivanov, D. (2012) Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA. PLoS Genetics 8(8): e1002856. Link to paper
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Lochmann, B., and Ivanov, D. (2012) Histone H3 localizes to the centromeric DNA in budding yeast. PLoS Genetics 8(5): e1002739. Link to paper
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Ivanov, D., and Nasmyth, K. (2007) A physical assay for sister chromatid cohesion in vitro. Mol. Cell 27, 300-310. Link to paper
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Ivanov, D., and Nasmyth, K. (2005) A topological interaction between cohesin rings and a circular minichromosome. Cell 122, 849-860. Link to paper
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Ivanov, D., Schleiffer, A., Eisenhaber, F., Mechtler, K., Haering, C.H. and Nasmyth, K. (2002) Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion. Current Biology 12, 323-328. Link to paper
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Ivanov, D., Kwak, Y.T., Guo, J., and Gaynor, R.B. (2000) Domains in the SPT5 protein that modulate its transcriptional regulatory properties. Mol. Cell. Biol. 20, 2970-2983. Link to paper
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Kwak, Y.T., Ivanov, D., Guo, J., Nee, E., and Gaynor, R.B. (1999) Role of the human and murine cyclin T proteins in regulating HIV-1 Tat-activation. J. Mol. Biol. 288, 57-69. Link to paper
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Ivanov, D., Kwak, Y.T., Nee, E., Guo, J., Garcia-Martinez, L.F., and Gaynor, R.B. (1999) Cyclin T domains involved in complex formation with Tat and TAR RNA are critical for Tat-transactivation. J. Mol. Biol. 288, 41-56. Link to paper
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Garcia-Martinez, L.F., Mavankal, G., Neveu, J.M., Lane, W.S., Ivanov, D., and Gaynor, R.B. (1997) Purification of a Tat-associated kinase reveals a TFIIH complex that modulates HIV-1 transcription. EMBO J. 16, 2836-2850. Link to paper
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Garcia-Martinez, L.F., Ivanov, D., and Gaynor, R.B. (1997) Association of Tat with purified HIV-1 and HIV-2 transcription preinitiation complexes. J. Biol. Chem. 272, 6951-6958. Link to paper